REFEREED Publications

• 43. E. Gagarina, J.J.W. van der Vegt and O.B. 2013:
  Horizontal Circulation and Jumps in Hamiltonian Water Wave Model.
  Accept. subject to minor revisions Nonlinear Processes in Geophysics.
• 42. S. Nurijanyan, J.J.W. van der Vegt, O.B. 2013:
  Hamiltonian DGFEM for rotating linear incompressible Euler equations: inertial waves. In press J. Comp. Phys.
• 41. Thornton, Weinhart, Luding, B. 2012: Frictional dependence of shallow granular flows from particle simulations.
  Eur. Phys. J. 35, 127. eprints.
• 40. Thornton, Weinhart, Luding, B. 2012: Modelling of particle size segregation: calibration using the discrete particle method.
  Int. J. Mod. Phys. C. 23, 1240014. eprints
• 39. Weinhart, Thornton, Luding, B. 2012:
  From granular particles to continuum fields near a bounday. Special Issue. Granular Matter 14, 289-294. eprints.
• 38. Weinhart, Thornton, Luding, B. 2012:
  Closure relations for shallow granular flows from particle simulations. Granular Matter 14, 531-552. eprints.
• 37. O.B., Elena Gagarina, Wout Zweers, Anthony Thornton 2011: Bore Soliton Splash -van spektakel tot oceaangolf?
  Ned. Tijdschrift voor Natuurkunde. Popular science version in Dutch. 77/12, 446-450
• 36. Sollie, Van der Vegt and Bokhove 2011:
  Space-time discontinuous Galerkin Finite Element Method for two-fluid flows. J. Comp. Physics 230, 789-817.
• 35. C. Cotter and O. Bokhove 2010:
  Water wave model with accurate dispersion and vertical vorticity. Peregrine Commemorative Issue J. Eng. Maths. 67, 33-54.
• 34. O. Bokhove and Marcel Oliver 2009:
  Hamiltonian N layer model for atmospheric dynamics. (memo 2008) Geophys. Astrophys. Fluid Dyn. 103(6), 423-442.
• 33. Onno Bokhove and Vijaya R. Ambati 2009: Hybrid Rossby-shelf modes in a laboratory ocean. J. Phys. Ocean. 39(10), 2523-2542.
  Part of special collection in honour of Joe Pedlosky's 70th birthday in 2008.
  Hybrid Rossby-shelf modes simulation with discontinuous Galerkin FEM: potential vorticity "omega" and streamfunction Psi
  Laboratory visualizations: Hybrid Rossby-shelf mode travelling through a cylindrical laboratory ocean
• 32. Sander Rhebergen, Onno Bokhove, and Jaap van der Vegt, 2009:
  Discontinuous Galerkin finite element methods for shallow two-phase flows. CMAME 198, 819-830.
• 31. Ben Akers and Onno Bokhove, 2008: Hydraulic flow through a contraction: multiple steady states. eprints. Phys. Fluids. 20, 056601.
  Movie (Akers & B. '05): multiple steady states in horizontal channel; pink water; bird's eye view.
  Movie (Akers & B. '07): reservoir state.
• 30. Y. Xu, J.J.W. van der Vegt, and O. Bokhove, 2008:
  Discontinuous Hamiltonian Finite Element Method for a Bilinear Poisson Bracket. J. Sci. Comput. 35, 242-265.
  doi:10.1007/s10915-008-9191-y. eprints. Based on a Finite Volume exercise vi of Bokhove in the course (2005) numerical techniques for PDE's.
• 29. P. Tassi, S. Rhebergen, C. Vionnet, and O. Bokhove, 2008:
  A discontinuous Galerkin finite element model for bed evolution under shallow flows. Comp. Methods Appl. Mech. Eng. 197, 2930-2947. pdf.
• 28. Sander Rhebergen, Onno Bokhove, and Jaap van der Vegt, 2008:
  Discontinuous Galerkin finite element methods for hyperbolic nonconservative partial differential equations. J. Comp. Phys. 227, 1887-1922. eprints.
• 27. V.R. Ambati and O. Bokhove, 2007:
  Space-time discontinuous Galerkin discretization of rotating shallow water equations. J. Comp. Phys. 225, 1233-1261. eprints.
• 26. Van der Vegt, J.J.W., Iszak, F, and Bokhove, O. 2007:
  Error analysis of a continuous-discontinuous Galerkin finite element model for generalized 2D vorticity dynamics. Siam J. Num. Anal. 45, 1349 eprints.
• 25. Bokhove, O. and P. Lynch 2007: Air parcel and air particles: Hamiltonian dynamics. Nieuw Archief voor Wiskunde 5, 100-106. eprints.
  (Accessible article for wider scientific audience. Two reviewers including one focussing especially on mathematical content.)
• 24. L. Pesch, A. Bell, W.E.H. Sollie, V.R. Ambati, O. Bokhove and J.J.W. van der Vegt, 2007:
  hpGEM- A software framework for Discontinuous Galerkin finite element methods, ACM Transactions on Software 33 (4). eprints.
• 23. A.W. Vreman, M. Al-Tarazi, J.A.M. Kuipers, M. van Sint Annaland, and O. Bokhove 2007:
  Supercritical shallow granular flow through a contraction: experiment, theory and simulation. J. Fluid Mech. 578, 233-269 See: Vreman et al. and also Memo. 1788, Math. Comm. Dept. of Applied Math. 2005, Univ. of Twente. ISSN 0169-2690
• 22. P. Tassi, O. Bokhove, and C. Vionnet, 2007:
  Space discontinuous Galerkin method for shallow water flows -kinetic and HLLC flux, and potential vorticity-generation. Advances in water resources 30, 998-1015.
• 21. V.R. Ambati and O. Bokhove, 2007: Space-time finite element shallow water flows. J. Comp. Appl. Math. 204 (2), 452-462.
• 20. E. Bernsen, O. Bokhove, and D. van der Sar, 2006: Numerical prediction of rose growth. Acta Horticulturae. 718, 89-96.
  Memo. 1803 with appendices.
• 19. Bokhove, O. and Oliver, M. 2006: Parcel Eulerian-Lagrangian fluid dynamics for rotating geophysical flows.
  Proc. Roy. Soc. A. 462, 2575-2592, preprint.
• 18. Bernsen, E., Bokhove, O.and Van der Vegt, J.J.W. 2006:
  A (Dis)Continuous Finite Element Model for Generalized 2D Vorticity Dynamics. J. Comp. Phys. 212, 719-747. technical appendices. Memo. 1787 Dept. of Applied Math., Univ. of Twente. ISSN 0169-2690
• 17. Woods, A.W., Bokhove, O., Boer de, A., Hill, B.E. 2006:
  Compressible magma flow in a two-dimensional elastic-walled conduit (proofs). Earth Planet. Sci. Lett. 246, 241-250.
• 16. O. Bokhove, 2005: Hamiltonian restriction of Vlasov equations into two-layer isopycnic and isentropic equations. Applied Math. Lett. 18, 1418-1425.
• 15. Bokhove, O., Woods, A.W., and Boer de, A. 2005: Magma Flow through Elastic-Walled Dikes.
  Theor. Comput. Fluid Dyn., 19, 261-286. Simulation Matlab and c-program software for the article.
• 14. O. Bokhove, 2005:
  Flooding and drying in finite-element Galerkin discretizations of shallow-water equations. Part I: One dimension. J. Sci. Comput. 22, 47-82.
• 13. O. Bokhove, 2002: Decompressie van magma in opslagtunnels. Nederlands Tijdschrift voor Natuurkunde 68
  (J. of the Dutch Physics Association) 232-235. (English translation with technical appendices: ``Decompression of magma into repository tunnels'', with A.W. Woods, Memo. 1654, Math. Comm. 2002 Faculty of Mathematical Sciences, Univ. of Twente, ISSN 0169-2690.)
• 12. Andrew W. Woods, Steve Sparks, Onno Bokhove, Anne-Marie Lejeune, Chuck Connor, and Brittain Hill 2002:
  Modelling magma-drift interaction at the proposed high-level radioactive waste repository at Yucca Mountain, Nevada, USA. Geophys. Res. Lett. 29 10.1029.
• 11. J. Vanneste and O. Bokhove, 2002: Dirac-bracket aproach to nearly-geostrophic Hamiltonian balanced models. Physica D 164, 152-167
  
• 10. Onno Bokhove, 2002: Eulerian variational principles for stratified hydrostatic equations. J. Atmos. Sci. 59, 1619-1628.
• 9. Onno Bokhove, 2000: On hydrostatic flows in isentropic coordinates. J. Fluid. Mech. 402, 291-310.
• 8. Onno Bokhove and E.R. Johnson, 1999:
  Hybrid Coastal and Interior Modes for Two-Dimensional Flow in a Cylindrical Ocean. J. Phys. Ocean. 29, 93-118.
• 7. Onno Bokhove, 1999: Wiskunde in Weerkunde.
  Ned. Tijds. voor Nat. (Meteorology and Mathematics. Journal of the Dutch Physics Association.), 65, 9-13.
• 6. Onno Bokhove, Jacques Vanneste, and Thomas Warn, 1998:
  Variational Principle for Barotropic Quasi-Geostrophic Flows. Geophys. Astro. Fluid Dyn. , 88, 67-79.
• 5. Bokhove, O., 1997: Slaving principles, balanced dynamics and the Boussinesq equations. J. Atmos. Sci., 54, 1662-1674.
• 4. Bokhove, O. , and T. G. Shepherd, 1996: On Hamiltonian balanced dynamics and the slowest invariant manifold. J. Atmos. Sci., 53, 276-297.
• 3. Warn, T., O. Bokhove, T. G. Shepherd, and G. K. Vallis, 1995:
  Rossby-number expansions, slaving principles and balance dynamics. Quart. J. Roy. Meteor. Soc., 121, 723-739.
• 2. Bokhove, O. , C. Bruin, and A. Compagner, 1994:
  Ensemble properties and molecular dynamics of unstable systems, J. Stat. Phys., 74, 55-73.
• 1. A. Compagner, C. Bruin, O. Bokhove, 1991: Molecular dynamics of unstable systems. Int. J. of Modern Physics C2, 300-304.

• Woods, A.W., S. Sparks, O. Bokhove, A.M. Lejeune, C. Connor, and B. Hill, 1999:
  On the motion of magma following the intersection of a dike with a horizontal subsurface tunnel, Eos, Transactions of the American Geophysical Union, 80(46): F1187.
• O.B. and Valerie Zwart, 2010: Fluid Fascinations. Qua Art Qua Science brochure, pp. 6. Pdf posted soon. Booklet available upon request till out of stock.
• O.B., Vladimir Molchanov, Marcel Oliver and Bob Peeters 2013:
  On the rate of convergence of the Hamiltonian particle-mesh method.
  In: Meshfree Methods for Partial Differential Equations VI (M. Griebel and M.A. Schweitzer, eds.),
  Lecture Notes in Computational Science and Engineering Vol. 89, Springer, Berlin, 25-43.

• S. Legg and K.M.H. Huijts, 2006: Preliminary simulations of internal waves and mixing generated by finite amplitude tidal flow over isolated topography.
  Deep Sea Research, part II. 53, 140-156. Based on practical work Karin Huijts (M.Sc.) at Woods Hole Oceanographic Institution during;
  Dr. Bokhove strongly stimulated this summer student fellowship with Dr. Legg
• V.R. Ambati and co-authors 2012: Port-Hamiltonian discretization for Open Channel Flows. Submitted to Systems and Control Letters.
  Gave advice on time integration and numerical fluxes. Accepted.

• 44. W. Kristina, B. van Groesen, and O.B. 2013:
  Effective Coastal Boundary Conditions for Dispersive Tsunami Propagation. Submitted Theor. Comput. Fluid Dynamics. 27 pp. July 2012.
• 45. S. Nurijanyan, O.B. and L.R.M. Maas 2013: Inertial waves in a cuboid. Note on series solutions. Subm. Phys. Fluids Nov. 2012.
• 46. O.B., Bram van der Horn, Devaraj van der Meer, Elena Gagarina, Wout Zweers, Anthony Thornton 2013:
  Revisiting Hele-Shaw Dynamics to better understand Beach Evolution. Subm. Geophys. Res. Letters.
• 47. Anthony Thornton, Bram van der Horn, Devaraj van der Meer, Wout Zweers, O.B. 2013:
  Beach Creation by Breaking Waves. Subm. J. Env. Fluid Dyn.

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• 48. S. Nurijanyan, J.J.W. van der Vegt, and O.B. 2013:
  Hamiltonian DGFEM for linear incompressible Euler equations: free surface waves. For J. Comp. Phys.
• 49. E, Gagarina, V.R. Ambati, J.J.W. van der Vegt and O. Bokhove 2011:
  Variational time discontinuous and space continuous Galerkin method for nonlinear free surface waves. In preparation.
  Time discontinuous and space continuous variational DGFEM in 2D now works and is stable. Preversion 2008: eprints.
• 50. Wout Zweers, Anthony Thornton, ..., and O.B. 2013: Mathematics of a Slice of Beach. For Nieuw Archief Wiskunde.
  Popular science version, invited.
• 51. Anthony Thornton, Martin Robinson, Elena Gagarina, Wout Zweers, O.B. 2011: Bore Soliton Splash. In preparation.
  
  
• Bokhove, Slaved Hamiltonian method a.o.

• (i) EPSRC Case on "Data Assimilation for Idealised Mathematical Models of Weather Prediction" 2012. PhD 2013-2016: TBA.
  

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• 4. B. van Groesen with Onno Bokhove and Andonowati 2007-06-07 Nearshore tsunami modelling and simulation. NWO ALW. Approved. Ph.D.: Wenny Kristina 2008-2012.
• 3. O. Bokhove and J.J.W. van der Vegt 2007-05-16 A numerical wave tank for complex wave and current interactions, Proposal to STW, Dutch Engineering council. Approved Dec. 2007. PhD: Shavarsh Nurijanyan 2009-2012. Postdoc: Vijaya Ambati.
• 2. O. Bokhove and J.J.W. van der Vegt 2008 Compatible mathematical models for coastal hydrodynamics. Awarded. NWO EW-proposal 15-01-2008. PhD: Elena Gagarina.
• 1. "Polydispersed granular flow through inclined channels -influence of particle characteristics, channel rotation and geometry"
  STW/Neth. Eng. Res. Council with users: Corus, Unilever, BASF; four university groups from UT and TUe. Approved 2010. PhD: Deepak Tunuguntla.
  
  

• 1. Bokhove, O. and A. Compagner, 1990: One-dimensional collapse. In: Computational Physics and Cellular Automata (A. Pires, D. P Landau and H. Herrmann, eds.), World Scientific, Singapore, 179-182.
• 2. Onno Bokhove, 2002: Balanced models in Geophysical Fluid Dynamics: Hamiltonian formulation, constraints and formal stability. (old draft online) Chapter 1, 63 pp., in ``Large-Scale Atmosphere-Ocean Dynamics 2, geometric Methods and Models''. Editted by J. Norbury and I. Roulstone, Cambridge University Press. 364 pp, ISBN: 0521807573.
• 3. O. Bokhove, and D. Wirosoetisno, 2004: Drying and wetting in finite element shallow-water flows In: Shallow Flows Research presented at the International Symposium on Shallow Flows, Delft, Netherlands, 2003 Eds. Gerhard H. Jirka and Wim S. J. Uijttewaal, Balkema Publishers. ISBN: 9058097005, 601-608.
• 4. O. Bokhove, 2005: Wave-vortex interactions in the atmosphere, and climate prediction. (Preprint.) Proceedings of the ICTAM04 Conference in Warsaw, Poland, Publisher: IPPT PAN, Warsaw 2004, ISBN: 83-89687-01-1, Eds. Witold Gutkowski and Tomasz Kowalewski, 103-116.
• 5. O. Bokhove and A.R. Thornton 2012: Shallow granular flows. Chapter in Handbook of Environmental Fluid Dynamics.
  Editor: Joe Fernando; Taylor and Francis.

• Bokhove, O., 1990: Veeldeeltjessystemen met Vereenvoudigde Gravitatiepotentialen. (Many-particle systems with simplified gravitational potentials.), M.Sc. Thesis. Delft University of Technology, 77 pp.
• Bokhove, O., 1996: On balanced models in Geophysical Fluid Dynamics: slowest invariant manifolds, slaving principles, and Hamiltonian Structure: Ph.D. Dissertation. University of Toronto, 186 pp.