antonios zagaris

universiteit twente
applied analysis & mathematical physics
office zi3009
zilverling
7522 nb enschede
[email] a.zagaris (at) utwente.nl
[google scholar] here
[phone] (+31) (0)53 489 3409
[fax] (+31) (0)53 489 4833

research interests

publications & preprints

—phytoplankton dynamics—

'emergence of steady and oscillatory localized structures in a phytoplankton-nutrient model' ( with a. doelman >< nonlinearity 24 (2011), pp.3437-3486 | doi 10.1088/0951-7715/24/12/007 ) [ arXiv ]
'blooming in a non-local, coupled phytoplankton-nutrient model' ( with a. doelman, n.n. pham thi, and b.p. sommeijer >< siap 69(4) (2009), pp.1174-1204 | doi 10.1137/070693692 ) [ ps / pdf ]

—synthetic and systems biology—

'automated design of programmable enzyme-driven dna circuits' ( with a. van roekel, l. meijer, s. masroor, z. félix garza, a. estévez-torres, y. rondelez, m. peletier, p. hilbers, t. de greef >< submitted to acs synthetic biology (2014) )
'relaxation behavior in reactive protein networks as instantiated in the phosphotransferase system' ( with h. härdin, a. willms and h.v. westerhoff >< febs j 281(2) (2014), pp.531-548 | doi 10.1111/febs.12664 ) [ online ]
'simplified yet highly accurate enzyme kinetics for cases of low substrate concentrations' ( with h. härdin, k. krab, and h.v. westerhoff >< febs j 276(19) (2009), pp.5491-5506 | doi 10.1111/j.1742-4658.2009.07233.x ) [ online ]

—multiscale dimension reduction methods—

'tracking pattern evolution through extended center manifold reduction and singular perturbations' ( with l. sewalt, a. doelman, h. meijer, and v. rottschäfer >< submitted to physica d (2014) ) [ preprint ]
'stability and stabilization of the constrained runs schemes for equation-free projection to a slow manifold' ( with c. vandekerckhove, c.w. gear, t.j. kaper, and i.g. kevrekidis >< dcds-a 32(8) (2012), pp.2759-2803 | doi 10.3934/dcds.2012.32.2759 ) [ online ]
'analysis of the accuracy and convergence of equation-free projection to a slow manifold' ( with w.c. gear, t.j. kaper, and i.g. kevrekidis >< esaim: m2an 43(4) (2009), pp.757-784 | doi 10.1051/m2an/2009026 ) [ ps / pdf ]
'reduction for michaelis-menten-henri kinetics in the presence of diffusion' ( with l.v. kalachev, h.g. kaper, t.j. kaper, and n. popovic >< electron. j. diff. eqns., conference 16 (2007), pp.155-184 ) [ ps / pdf ]
'two perspectives on reduction of ordinary differential equations' ( with h.g. kaper and t.j. kaper >< math. nach. 278 (2005), pp.1629-1642 | doi 10.1002/mana.200410328 ) [ pdf ]
'projecting to a slow manifold: singlularly perturbed systems and legacy codes' ( with w.c. gear, t.j. kaper, and i.g. kevrekidis >< siads 4 (2005), pp.711-732 | doi 10.1137/040608295 ) [ ps / pdf ]
'fast and slow dynamics for the computational singular perturbation method' ( with h.g. kaper and t.j. kaper >< multiscale model. simul. 2(4) (2004), pp.613-638 | doi 10.1137/040603577 ) [ ps / pdf ]
'analysis of the computational singular perturbation reduction method for chemical kinetics' ( with h.g. kaper and t.j. kaper >< j. nonlin. sci., 14 (2004), pp.59-91 | doi 10.1007/s00332-003-0582-9 ) [ ps / pdf ]

'analysis of reduction methods for multiscale problems' ( ph.d. thesis, supervised by t.j. kaper; >< boston university, may 2005 ) [ ps / pdf ]

cv

teaching (onderwijs)

asymptotic methods for differential equations [spring semester, 2013]

theory of partial differential equations [second quartile, fall 2011]

applied analytical methods [fourth quartile, spring 2012]

a few extras

a talk on plankton dynamics (part ii is here) | mbi, 2011

an annotated bibliography on (mathematically oriented) plankton research | mcrn, 2012

a digest of our plankton work | nonlinearity, 2013, mathematics of planet earth (mpe2013) highlights

a soft intro to plankton research [in print & in dutch] | naw, 2013, special mpe2013 issue


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